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DraconiticBiochemistryBiomolecules · Catabolism · Biosynthesis · Metabolism
Data

Field guide

Read the network before tracing the line: carbon exchange, energy conversion, lipid and amino-acid chemistry, nucleotide economy, cofactors, and the mechanistic scale revealed by oxalosuccinate.

Guide chapters
1
Metabolic domains
12
Pathway districts
58
Map edition
human-metabolism-r97-expanded-20261025, 2,039 events
ENERGY

Central energy conversion

The mitochondrial and cytosolic interfaces that oxidize carbon, transfer reducing equivalents and couple electron movement to ATP formation.

Citric acid cycle and its energy relationshipsA circular mitochondrial pathway with eight labeled carbon intermediates and links toward respiratory electron transfer. MITOCHONDRIAL MATRIX · PATHWAY-NATIVE VIEW Citrate · C₆Isocitrate · C₆2-Oxoglutarate · C₅Succinyl-CoA · C₄Succinate · C₄Fumarate · C₄Malate · C₄Oxaloacetate · C₄TCAcarbon junction · reducing equivalents Acetyl-CoANADH / FADH₂to electron transport
Cycle geometry is preserved because the pathway’s topology and carbon bookkeeping are clearer in a ring than in a generic graph.

The citric acid cycle is simultaneously an oxidative sequence and an exchange hub. Intermediates can leave for biosynthesis or enter from other routes, which is why anaplerotic and cataplerotic reactions belong beside the ring rather than in a footnote.

Respiratory electron transport and ATP formation are coupled through a membrane gradient, not through a direct chemical handoff from NADH to ATP. The compartment boundary is therefore a functional component of the system.

Ideas to carry into the map

  1. The TCA cycle is an exchange hub.
  2. A membrane gradient couples electron transport to ATP synthesis.
  3. Displayed direction is not a measured rate.

Pathways in this field note

All guide chapters